Package: OTclust 1.0.6
OTclust: Mean Partition, Uncertainty Assessment, Cluster Validation and Visualization Selection for Cluster Analysis
Providing mean partition for ensemble clustering by optimal transport alignment(OTA), uncertainty measures for both partition-wise and cluster-wise assessment and multiple visualization functions to show uncertainty, for instance, membership heat map and plot of covering point set. A partition refers to an overall clustering result. Jia Li, Beomseok Seo, and Lin Lin (2019) <doi:10.1002/sam.11418>. Lixiang Zhang, Lin Lin, and Jia Li (2020) <doi:10.1093/bioinformatics/btaa165>.
Authors:
OTclust_1.0.6.tar.gz
OTclust_1.0.6.zip(r-4.5)OTclust_1.0.6.zip(r-4.4)OTclust_1.0.6.zip(r-4.3)
OTclust_1.0.6.tgz(r-4.4-x86_64)OTclust_1.0.6.tgz(r-4.4-arm64)OTclust_1.0.6.tgz(r-4.3-x86_64)OTclust_1.0.6.tgz(r-4.3-arm64)
OTclust_1.0.6.tar.gz(r-4.5-noble)OTclust_1.0.6.tar.gz(r-4.4-noble)
OTclust_1.0.6.tgz(r-4.4-emscripten)OTclust_1.0.6.tgz(r-4.3-emscripten)
OTclust.pdf |OTclust.html✨
OTclust/json (API)
NEWS
| # Install 'OTclust' in R: |
| install.packages('OTclust', repos = c('https://lixiangzhang.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lixiangzhang/otclust/issues
- YAN - Single cell gene data from Yan's paper
- sim1 - Simulated toy data
- vis_pollen - Single cell gene visualization data from Pollen's paper
Last updated 1 years agofrom:8070f0d0ff. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 02 2024 |
| R-4.5-win-x86_64 | OK | Nov 02 2024 |
| R-4.5-linux-x86_64 | OK | Nov 02 2024 |
| R-4.4-win-x86_64 | OK | Nov 02 2024 |
| R-4.4-mac-x86_64 | OK | Nov 02 2024 |
| R-4.4-mac-aarch64 | OK | Nov 02 2024 |
| R-4.3-win-x86_64 | OK | Nov 02 2024 |
| R-4.3-mac-x86_64 | OK | Nov 02 2024 |
| R-4.3-mac-aarch64 | OK | Nov 02 2024 |
Exports:alignclustCPScplotCPSensemblejaccardmplototclustotplotperturbpplotpreprocessvisCPSwassDist
Dependencies:classclicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcpprlangscalestibbleutf8vctrsviridisLitewithr
